Similar HOG based on pairwise relations to

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Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
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If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

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There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

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To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

Search

How does the search work?

Input a query in the search field. Everytime you press Space or Enter after a word, a token will be created. The token is composed of a prefix describing how the query should be treated and the actual query itself.

What are the different types of tokens?

Each token represents either a Gene, HOG, OMA group, or Taxon. Prefixes are used to specify which category to associate with the query term.

Category	Prefixes
Genes	id, go, ec, description, domain, sequence
HOGs	hog, sequence
OMA Groups	omagroup, fingerprint, sequence
Taxon	species, taxid, taxon

For example, the token [go:4225] will search for genes in the OMA database annotated with the GO:0004225 gene ontology term.
How to search for a multi-word query?

If your query term is composed of multiple words (e.g homo sapiens), use " " to encapsulate it.

How many tokens can I have?

There is no limit on the number of tokens. It is not possible to enter multiple tokens of different categories, except taxon, which can be combined with other categories. For example, you can search for 'hog:60627 species:HUMAN' to return human genes found in HOG:606207.

How to edit/delete a token?

To edit a query, click on it to modify the input field. To edit a prefix, click on the dropdown icon to select another one. To remove a token, click on the x to delete it.

Autosuggest

Typing a query without hitting enter or space will prompt an autosuggestion for the identifier after a few seconds.

HOG:E0781959.1a.4a.1c with 7 members (Fras1 related extracellular matrix)

Eumetazoa / Bilateria / Deuterostomia / Chordata / Vertebrata / Gnathostomata / Euteleostomi /

... /

Neopterygii / Teleostei / Clupeocephala / Euteleosteomorpha / Acanthomorphata / Percomorphaceae / Ovalentaria / Atherinomorphae /

Cyprinodontiformes /

Completeness score: 1.00

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This HOG has 30 similar HOGs:

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Rank	HOG ID	Shared orthologs	HOG size	Description
1	HOG:E0781959.1a.4a.1c	279	69	Fras1 related extracellular matrix
2	HOG:E0781959.1a	98	338	Fras1 related extracellular matrix
3	HOG:E0781959.1a.3a	21	3	Fras1 related extracellular matrix
4	HOG:E0781959	21	344	Fras1 related extracellular matrix
5	HOG:E0781959.1a.4a.1c.4b	14	2	Fras1 related extracellular matrix
6	HOG:E0781959.1a.4a.1c.4a	14	2	Fras1 related extracellular matrix
7	HOG:E0781959.1a.4a.1c.3b	14	2	Fras1 related extracellular matrix
8	HOG:E0781959.1a.4a.1c.3a	14	2	Fras1 related extracellular matrix
9	HOG:E0781959.1a.2a	14	2	Fras1 related extracellular matrix
10	HOG:E0781959.1a.4a.1d	13	148	Fras1 related extracellular matrix
11	HOG:E0781959.1a.4a.1a	8	2	Fras1 related extracellular matrix
12	HOG:E0786526	7	22	extracellular matrix protein
13	HOG:E0781959.1a.4a.1d.8b	7	61	Fras1 related extracellular matrix
14	HOG:E0781959.1a.4a.1c.5b	7	1	Fras1 related extracellular matrix
15	HOG:E0781959.1a.4a.1c.5a	7	1	Fras1 related extracellular matrix
16	HOG:E0781959.1a.4a.1c.2c	7	1	Fras1 related extracellular matrix
17	HOG:E0781959.1a.4a.1c.2b	7	1	Fras1 related extracellular matrix
18	HOG:E0781959.1a.4a.1c.2a	7	1	Fras1 related extracellular matrix
19	HOG:E0781959.1a.4a	7	261	Fras1 related extracellular matrix
20	HOG:E0781959.1a.1d	7	1	Fras1 related extracellular matrix
21	HOG:E0781959.1a.1c	7	1	Fras1 related extracellular matrix
22	HOG:E0781959.1a.1b	7	1	Fras1 related extracellular matrix
23	HOG:E0781959.1a.1a	7	1	Fras1 related extracellular matrix
24	HOG:E0762622.2b	6	1	extracellular matrix
25	HOG:E0786526.1a	4	11	extracellular matrix protein

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